Eric Wagoner
8d656d8e7d
- Rename sync-knowledgebases to kb-sync (drop the aliased indirection) - Generalize source discovery: scan each ~/work project for either docs/knowledgebase or documentation/knowledgebase - Add kb-publish: rsync collected docs into the site repo, build the MkDocs site, and commit/push to publish to GitLab Pages
112 lines
4.8 KiB
Plaintext
112 lines
4.8 KiB
Plaintext
# Natera-specific environment and tooling
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# Sourced last from .zshrc on Natera machines (when this file is present).
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# All Natera config lives here only.
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# PATH for Natera/Claude tooling
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export PATH="$HOME/.local/bin:$PATH"
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# Claude Code (Bedrock)
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export CLAUDE_CODE_USE_BEDROCK=1
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# export AWS_REGION=us-west-2
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export ANTHROPIC_SMALL_FAST_MODEL_AWS_REGION=us-west-2
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export ANTHROPIC_SMALL_FAST_MODEL=global.anthropic.claude-haiku-4-5-20251001-v1:0
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export CLAUDE_CODE_ENABLE_TELEMETRY=1
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# Primary model (what Claude Code uses by default)
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export ANTHROPIC_MODEL='us.anthropic.claude-opus-5'
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# Family pins (used by /model and for subagents)
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export ANTHROPIC_DEFAULT_OPUS_MODEL='us.anthropic.claude-opus-5[1m]'
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export ANTHROPIC_DEFAULT_SONNET_MODEL='us.anthropic.claude-sonnet-5[1m]'
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export ANTHROPIC_DEFAULT_HAIKU_MODEL='us.anthropic.claude-haiku-4-5-20251001-v1:0'
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export CLAUDE_CODE_USE_MANTLE=1
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export AWS_REGION=us-east-1
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# Raise the default 64000 output cap (helpful on Opus 4.7)
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export CLAUDE_CODE_MAX_OUTPUT_TOKENS=128000
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# Request a 1-hour prompt cache TTL instead of the 5-minute default.
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# Good for long-lived sessions; writes are billed at a higher rate.
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#export ENABLE_PROMPT_CACHING_1H=1
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# OpenTelemetry (Natera staging)
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export OTEL_METRICS_EXPORTER=otlp
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export OTEL_EXPORTER_OTLP_PROTOCOL=http/protobuf
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export OTEL_RESOURCE_ATTRIBUTES="user.email=$USER@natera.com"
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# Jellyfish AI reporting — endpoint + bearer token live in zshrc-natera.private
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# (sourced last, so its protocol/endpoint overrides take effect). See the
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# Jellyfish block in zshrc-natera.private.example for the shape.
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# Project-specific aliases
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alias workbench='cd ~/work/rosalis'
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alias core='cd ~/work/yalp-core'
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alias histo='cd ~/work/yalp-histology'
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alias pipeline='cd ~/work/yalp-pipeline-integration'
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alias assayapi='cd ~/work/yalp-assay-qc-api'
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alias assay='cd ~/work/yalp-assay-qc'
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alias lvsync='cd ~/work/yalp-lv-sync'
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# YALP Core development aliases
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alias yalp:db:password='core && yalp-db-pw-dev | pbcopy'
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alias yalp:db:rebuild='core && make local_db_destroy && make local_db_init && make local_db_start'
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alias yalp:db:start='core && make local_db_start'
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alias yalp:db:stop='core && make local_db_stop'
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alias yalp:api='core && make local_run_api'
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alias yalp:psql='core && docker exec -it yalp-core-postgres psql -U postgres -d yalp_core_db'
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alias yalp:start='core && make local_db_start && make local_run_api'
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# YALP Core perf testing — close all boring tunnels, kill stale API, start perf DB + API (backgrounded)
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alias yalp:perf='core && boring list 2>/dev/null | tail -n +2 | awk "{print \$2}" | while read -r t; do boring close "$t" 2>/dev/null; done; lsof -ti :9258 | xargs kill 2>/dev/null; make local_container_db && make local_perf_db_start && make local_perf_run_api &>/dev/null & echo "YALP Core perf API starting on :9258 (pid $!)"'
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alias yalp:perf:stop='lsof -ti :9258 | xargs kill 2>/dev/null && echo "YALP Core perf API stopped" || echo "No process on :9258"'
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# Collect knowledgebase docs from all ~/work projects into ~/work/knowledgebases.
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# Shareable with teammates — no site-specific dependencies.
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kb-sync() {
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local src_base="$HOME/work"
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local dest_base="$HOME/work/knowledgebases"
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mkdir -p "$dest_base"
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for project_dir in "$src_base"/*/; do
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local project="${project_dir%/}"
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project="${project##*/}"
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local kb_dir=""
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for candidate in "$project_dir"docs/knowledgebase "$project_dir"documentation/knowledgebase; do
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[[ -d "$candidate" ]] && kb_dir="$candidate" && break
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done
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[[ -z "$kb_dir" ]] && continue
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echo "Syncing $project..."
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rm -rf "$dest_base/$project"
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cp -R "$kb_dir" "$dest_base/$project"
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done
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echo "Done. Knowledgebases collected in $dest_base"
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}
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# Build and publish the browsable knowledgebase site to GitLab Pages.
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# Runs kb-sync first, then updates the site repo.
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kb-publish() {
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local dest_base="$HOME/work/knowledgebases"
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local site_repo="$HOME/work/yalp-knowledgebases"
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kb-sync
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if [[ ! -d "$site_repo" ]]; then
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echo "Site repo not found at $site_repo — clone ewagoner/yalp-knowledgebases first."
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return 1
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fi
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echo "Updating site repo..."
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rsync -av --delete "$dest_base/" "$site_repo/knowledgebases/"
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python3 "$site_repo/scripts/build_site.py"
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(cd "$site_repo" && git add -A && git commit -m "sync: $(date +%Y-%m-%d)" && git push)
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echo "Site published."
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}
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# Natera repos use master as primary; rewrite "git switch main" to "git switch master"
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git() {
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if [[ "$1" == "switch" && "${2:-}" == "main" ]]; then
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command git switch master "${@:3}"
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else
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command git "$@"
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fi
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}
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# Sensitive values (AWS profile, OTEL endpoint, cert paths, refresh alias) are in zshrc-natera.private
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# Copy zshrc-natera.private.example to zshrc-natera.private and fill in. That file is gitignored.
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[[ -f ~/dotfiles/zshrc-natera.private ]] && source ~/dotfiles/zshrc-natera.private
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