# Natera-specific environment and tooling
# Sourced last from .zshrc on Natera machines (when this file is present).
# All Natera config lives here only.

# PATH for Natera/Claude tooling
export PATH="$HOME/.local/bin:$PATH"

# Claude Code (Bedrock)
export CLAUDE_CODE_USE_BEDROCK=1
export AWS_REGION=us-west-2
export ANTHROPIC_SMALL_FAST_MODEL_AWS_REGION=us-west-2
export ANTHROPIC_MODEL="us.anthropic.claude-sonnet-4-5-20250929-v1:0"
export ANTHROPIC_SMALL_FAST_MODEL="us.anthropic.claude-haiku-4-5-20251001-v1:0"
export CLAUDE_CODE_ENABLE_TELEMETRY=1
export CLAUDE_CODE_MAX_OUTPUT_TOKENS=4096
export MAX_THINKING_TOKENS=1024

# OpenTelemetry (Natera staging)
export OTEL_METRICS_EXPORTER=otlp
export OTEL_EXPORTER_OTLP_PROTOCOL=http/protobuf
export OTEL_RESOURCE_ATTRIBUTES="user.email=$USER@natera.com"

# Project-specific aliases
alias workbench='cd ~/work/rosalis'
alias core='cd ~/work/yalp-core'
alias histo='cd ~/work/yalp-histology'
alias pipeline='cd ~/work/yalp-pipeline-integration'
alias assayapi='cd ~/work/yalp-assay-qc-api'
alias assay='cd ~/work/yalp-assay-qc'
alias lvsync='cd ~/work/yalp-lv-sync'

# YALP Core development aliases
alias yalp:db:password='core && yalp-db-pw-dev | pbcopy'
alias yalp:db:rebuild='core && make local_db_destroy && make local_db_init && make local_db_start'
alias yalp:db:start='core && make local_db_start'
alias yalp:db:stop='core && make local_db_stop'
alias yalp:api='core && make local_run_api'
alias yalp:psql='core && docker exec -it yalp-core-postgres psql -U postgres -d yalp_core_db'
alias yalp:start='core && make local_db_start && make local_run_api'

# Sensitive values (AWS profile, OTEL endpoint, cert paths, refresh alias) are in zshrc-natera.private
# Copy zshrc-natera.private.example to zshrc-natera.private and fill in. That file is gitignored.
[[ -f ~/dotfiles/zshrc-natera.private ]] && source ~/dotfiles/zshrc-natera.private